PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_31484
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family C3H
Protein Properties Length: 290aa    MW: 33141.4 Da    PI: 7.0954
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_31484genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-0989113327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C++f++tG+Ck+ + C+++H++
  PEQU_31484  89 EPECQYFMKTGYCKFKSACRYHHPK 113
                 799********************96 PP

2zf-CCCH30.56.2e-10224250127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C++f++tG+Ck+ + C+F+H++
  PEQU_31484 224 PGEPECQHFMKTGYCKFKSACRFHHPK 250
                 5799*********************96 PP

3zf-CCCH26.41.2e-08264286326
                 S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                  + C +++r G Ck+G+ C+F+H 
  PEQU_31484 264 KPSCTHYSR-GNCKFGSACRFNHH 286
                 678******.*************5 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003567.7E-586113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.64386114IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-789113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-690116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-492115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.558223251IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4223250IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7225250IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.98E-5227252IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-4229249IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.727261288IPR000571Zinc finger, CCCH-type
SMARTSM003560.051262287IPR000571Zinc finger, CCCH-type
PfamPF006424.7E-6264286IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MAKDIFFGVD LMRNFAGRNV PDKLKEEREH IPLLWLIFTS SLVTVTSLLH APDIKTIDQQ  60
QELVSKDAAS EFSGGEPQQF DEYPQRPSEP ECQYFMKTGY CKFKSACRYH HPKSNLSSLS  120
LSLRPASNNS VPFRQDDPVE QLREITLPLE NTSNDQTAFL CPSSSDVPSQ VNVQWNVDQM  180
ATSPLNPPEI KMNLKVQELA NKDTAHEFYG RVESQQIDEY PQRPGEPECQ HFMKTGYCKF  240
KSACRFHHPK SNICFLARPL KPDKPSCTHY SRGNCKFGSA CRFNHHIEHG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.14e-31C3H family protein